Shiny dashboard for MR diagnostics and results

Opens an interactive bslib dashboard displaying instrument diagnostics (F-statistics, PheWAS, allele frequencies, missingness, heterogeneity) and MR results (primary estimate, sensitivity analyses, scatter/funnel/ leave-one-out plots). Styled to match the Medusa package website.

Usage

launchResultsExplorer(
  mrEstimate,
  sensitivityResults = NULL,
  diagnosticResults = NULL,
  combinedProfile = NULL,
  siteProfileList = NULL,
  instrumentTable = NULL,
  perSnpEstimates = NULL,
  negativeControlResults = NULL,
  launch.browser = TRUE,
  port = NULL
)

Arguments

mrEstimate

Output of computeMREstimate.

sensitivityResults

Output of runSensitivityAnalyses. Can be NULL.

diagnosticResults

Output of runInstrumentDiagnostics. Can be NULL.

combinedProfile

Output of poolLikelihoodProfiles.

siteProfileList

Optional named list of site profile objects from fitOutcomeModel.

instrumentTable

Output of getMRInstruments.

perSnpEstimates

Optional data frame of per-SNP summary statistics (output of fitOutcomeModel with analysisType = "perSNP"). Needed for scatter and funnel plots.

negativeControlResults

Output of runNegativeControlAnalysis. Can be NULL.

launch.browser

Logical. Whether to open a browser window. Default is TRUE.

port

Integer or NULL. Port for the Shiny server. NULL uses a random available port.

Value

Invisible NULL. Launches a Shiny app.

Details

Launch Interactive Results Explorer

See also

computeMREstimate, runSensitivityAnalyses, runInstrumentDiagnostics, generateMRReport

Examples

if (FALSE) { # \dontrun{
launchResultsExplorer(
  mrEstimate = estimate,
  sensitivityResults = sensitivity,
  diagnosticResults = diagnostics,
  combinedProfile = combined,
  instrumentTable = instruments,
  perSnpEstimates = perSnpEst
)
} # }